What honey bees eat, and the bacteria in their gut

Nectar is fuel and pollen is everything else. A honey bee also carries a small, specialised community of gut bacteria that it catches from its nestmates in its first days of life — and that antibiotics and at least one herbicide can disrupt.

Bee biologyReviewed 2026-09-29

Fuel and building material

A honey bee colony runs on two foods that do different jobs. Nectar, stored as honey, is carbohydrate: the fuel for flight, heat and wax-making. Pollen is everything else — protein, lipids, sterols, vitamins and minerals. Adult workers can live on sugar for a while, but brood cannot be reared without protein, and the protein comes from pollen eaten by young nurse bees and turned into the glandular food they feed to larvae.

Quantity is not the only question. In a caged-bee experiment, different single-plant pollens changed nurse bees' physiology — the development of the glands that make brood food and the level of vitellogenin, a storage protein central to bee health — and changed how well bees tolerated the gut parasite Nosema ceranae. A mixed pollen diet made no difference to healthy bees, but parasitised bees fed mixed pollen outlived those fed any single pollen except the richest in protein.

Bee bread: stored, and perhaps not fermented

Pollen that is not eaten at once is packed into cells with nectar, honey and bee secretions and sealed — bee bread. Most accounts, including earlier versions of this site, say lactic acid bacteria then ferment it over a week or so into a more digestible food. A 2014 study from the University of Arizona and a USDA bee research centre tested that and did not find support. Bees preferred to eat pollen stored for less than three days; freshly collected pollen carried few bacteria, and their numbers fell after four days of storage; stored and fresh pollen carried the same bacterial community; and there was roughly one microbe to a million units of pollen-grain surface.

Its authors concluded that the cell is a preservative environment, kept so by the added honey, nectar and secretions and by pollen itself, rather than a place where microbes transform the food. HoneyHQ treats the fermentation account as contested rather than wrong, because it rests on older culture-based work the 2014 study did not overturn on every point — but it no longer states it as fact.

The gut community

Compared with a mammal's, the honey bee's gut microbiome is strikingly simple. It is dominated by only about nine bacterial species clusters that are found in bees and nowhere else, with a great deal of variation between strains within them. Among the best studied are Snodgrassella alvi, Gilliamella apicola and Frischella perrara.

  1. Born without itA newly emerged worker has no gut bacteria at all.
  2. Caught from nursesWithin four to six days in the hive, characteristic communities form in the ileum and rectum. In experiments, typical communities formed only when nurse bees or their faeces were present; food sharing alone, or contact with comb, honey or bee bread, produced atypical ones.
  3. Put to workBees with their normal gut bacteria gained more weight than bees without. The bacteria produce short-chain fatty acids, lower the gut's acidity and oxygen, and appear to break down plant material in pollen into compounds that reach the bee's blood.

What disrupts it

  • Antibiotics. Beekeepers in some countries use them against bacterial brood disease. In one study, antibiotic treatment changed the size and make-up of the gut community for a long time afterwards and lowered survival, in the hive and in the laboratory when bees were then exposed to opportunistic bacterial pathogens.
  • Glyphosate. The herbicide works by blocking an enzyme, EPSPS, that plants and some bacteria depend on. Most bee gut bacteria carry a version of it, and Snodgrassella alvi carries the sensitive kind. Bees exposed to glyphosate at concentrations documented in the environment lost dominant gut species, and young workers so exposed died more often after later exposure to the pathogen Serratia marcescens.

The claims on this page

Every substantive claim is placed on a tier, and the top two tiers must also state what they are not claiming.

Emerging research

Real studies exist and point somewhere, but they are small, in vitro, in animals, or not yet replicated. Direction is not the same as a result.

Emerging research

Bee bread is lacto-fermented into a more nutritious, more digestible food.

Long stated in beekeeping and scientific writing on the basis of culture-based studies, but a 2014 multi-method study found few microbes in stored pollen, no distinct stored-pollen community, a bee preference for fresh pollen and intact grains, and concluded that storage preserves rather than converts pollen.

What this does not claim: It is not a claim that stored pollen contains no bacteria or undergoes no change at all, nor that bee bread is nutritionally the same as the day it was collected; it is a claim that the conversion story is contested.

  • Hive-stored pollen of honey bees: many lines of evidence are consistent with pollen preservation, not nutrient conversion — Molecular Ecology (2014) · Peer-reviewed article Link
Emerging research

Glyphosate disrupts the honey bee gut microbiota.

Controlled exposure at environmentally documented concentrations reduced dominant gut species, especially Snodgrassella alvi, and increased later pathogen mortality in young workers; the mechanism is the glyphosate-sensitive EPSPS enzyme most gut bacteria carry.

What this does not claim: It is not a measured effect on colonies in the field, nor a finding that glyphosate use causes colony losses.

  • Glyphosate perturbs the gut microbiota of honey bees — Proceedings of the National Academy of Sciences (2018) · Peer-reviewed article Link

Sources

  • Gut microbial communities of social bees — Nature Reviews Microbiology (2016) · Peer-reviewed article Link
  • Routes of acquisition of the gut microbiota of the honey bee Apis mellifera — Applied and Environmental Microbiology (2014) · Peer-reviewed article Link
  • Honeybee gut microbiota promotes host weight gain via bacterial metabolism and hormonal signaling — Proceedings of the National Academy of Sciences (2017) · Peer-reviewed article Link
  • Antibiotic exposure perturbs the gut microbiota and elevates mortality in honeybees — PLOS Biology (2017) · Peer-reviewed article Link
  • Glyphosate perturbs the gut microbiota of honey bees — Proceedings of the National Academy of Sciences (2018) · Peer-reviewed article Link
  • Influence of pollen nutrition on honey bee health: do pollen quality and diversity matter? — PLOS ONE (2013) · Peer-reviewed article Link
  • Hive-stored pollen of honey bees: many lines of evidence are consistent with pollen preservation, not nutrient conversion — Molecular Ecology (2014) · Peer-reviewed article Link
  • The Biology of the Honey Bee — Harvard University Press (1987) · Textbook

How sources are selected and weighted is set out in the sources and evidence policy.

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